Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa.
Identifieur interne : 002A55 ( Main/Exploration ); précédent : 002A54; suivant : 002A56Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa.
Auteurs : Hongsheng He [République populaire de Chine] ; Qing Dong ; Yuanhua Shao ; Haiyang Jiang ; Suwen Zhu ; Beijiu Cheng ; Yan XiangSource :
- Plant cell reports [ 1432-203X ] ; 2012.
Descripteurs français
- KwdFr :
- Cartographie chromosomique (MeSH), Données de séquences moléculaires (MeSH), Duplication de gène (MeSH), Exons (MeSH), Facteurs de transcription (génétique), Famille multigénique (MeSH), Génome végétal (MeSH), Introns (MeSH), Motifs d'acides aminés (MeSH), Phylogenèse (MeSH), Populus (génétique), Protéines végétales (génétique), Régulation de l'expression des gènes végétaux (MeSH), Séquence conservée (MeSH), Séquence d'acides aminés (MeSH), Évolution moléculaire (MeSH).
- MESH :
- génétique : Facteurs de transcription, Populus, Protéines végétales.
- Cartographie chromosomique, Données de séquences moléculaires, Duplication de gène, Exons, Famille multigénique, Génome végétal, Introns, Motifs d'acides aminés, Phylogenèse, Régulation de l'expression des gènes végétaux, Séquence conservée, Séquence d'acides aminés, Évolution moléculaire.
English descriptors
- KwdEn :
- Amino Acid Motifs (MeSH), Amino Acid Sequence (MeSH), Chromosome Mapping (MeSH), Conserved Sequence (MeSH), Evolution, Molecular (MeSH), Exons (MeSH), Gene Duplication (MeSH), Gene Expression Regulation, Plant (MeSH), Genome, Plant (MeSH), Introns (MeSH), Molecular Sequence Data (MeSH), Multigene Family (MeSH), Phylogeny (MeSH), Plant Proteins (genetics), Populus (genetics), Transcription Factors (genetics).
- MESH :
- chemical , genetics : Plant Proteins, Transcription Factors.
- genetics : Populus.
- Amino Acid Motifs, Amino Acid Sequence, Chromosome Mapping, Conserved Sequence, Evolution, Molecular, Exons, Gene Duplication, Gene Expression Regulation, Plant, Genome, Plant, Introns, Molecular Sequence Data, Multigene Family, Phylogeny.
Abstract
UNLABELLED
WRKY transcription factors participate in diverse physiological and developmental processes in plants. They have highly conserved WRKYGQK amino acid sequences in their N-termini, followed by the novel zinc-finger-like motifs, Cys₂His₂ or Cys₂HisCys. To date, numerous WRKY genes have been identified and characterized in a number of herbaceous species. Survey and characterization of WRKY genes in a ligneous species would facilitate a better understanding of the evolutionary processes and functions of this gene family. In this study, 104 poplar WRKY genes (PtWRKY) were identified in the latest poplar genome sequence. According to their structural features, the predicted members were divided into the previously defined groups I-III, as described in rice. In addition, chromosomal localization of the genes demonstrated that there might be WRKY gene hot spots in 2.3 Mb regions on chromosome 14. Furthermore, approximately 83% (86 out of 104) WRKY genes participated in gene duplication events, including 69% (29 out of 42) gene pairs which exhibited segmental duplication. Using semi-quantitative RT-PCR, the expression patterns of subgroup III genes were investigated under different stresses [cold, drought, salinity and salicylic acid (SA)]. The data revealed that these genes presented different expression levels in response to various stress conditions. Expression analysis exhibited PtWRKY76 gene induced markedly in 0.1 mM SA or 25% PEG-6000 treatment. The results presented here provide a fundamental clue for cloning specific function genes in further studies and applications.
KEY MESSAGE
This study identified 104 poplar WRKY genes and demonstrated WRKY gene hot spots on chromosome 14. Furthermore, semi-quantitative RT-PCR showed variable stress responses in subgroup III.
DOI: 10.1007/s00299-012-1241-0
PubMed: 22371255
Affiliations:
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Le document en format XML
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uniqKey="Shao Y" first="Yuanhua" last="Shao">Yuanhua Shao</name></author><author><name sortKey="Jiang, Haiyang" sort="Jiang, Haiyang" uniqKey="Jiang H" first="Haiyang" last="Jiang">Haiyang Jiang</name></author><author><name sortKey="Zhu, Suwen" sort="Zhu, Suwen" uniqKey="Zhu S" first="Suwen" last="Zhu">Suwen Zhu</name></author><author><name sortKey="Cheng, Beijiu" sort="Cheng, Beijiu" uniqKey="Cheng B" first="Beijiu" last="Cheng">Beijiu Cheng</name></author><author><name sortKey="Xiang, Yan" sort="Xiang, Yan" uniqKey="Xiang Y" first="Yan" last="Xiang">Yan Xiang</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2012">2012</date><idno type="RBID">pubmed:22371255</idno><idno type="pmid">22371255</idno><idno type="doi">10.1007/s00299-012-1241-0</idno><idno type="wicri:Area/Main/Corpus">002B24</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002B24</idno><idno 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type="province">Anhui</region></placeName></affiliation></author><author><name sortKey="Dong, Qing" sort="Dong, Qing" uniqKey="Dong Q" first="Qing" last="Dong">Qing Dong</name></author><author><name sortKey="Shao, Yuanhua" sort="Shao, Yuanhua" uniqKey="Shao Y" first="Yuanhua" last="Shao">Yuanhua Shao</name></author><author><name sortKey="Jiang, Haiyang" sort="Jiang, Haiyang" uniqKey="Jiang H" first="Haiyang" last="Jiang">Haiyang Jiang</name></author><author><name sortKey="Zhu, Suwen" sort="Zhu, Suwen" uniqKey="Zhu S" first="Suwen" last="Zhu">Suwen Zhu</name></author><author><name sortKey="Cheng, Beijiu" sort="Cheng, Beijiu" uniqKey="Cheng B" first="Beijiu" last="Cheng">Beijiu Cheng</name></author><author><name sortKey="Xiang, Yan" sort="Xiang, Yan" uniqKey="Xiang Y" first="Yan" last="Xiang">Yan Xiang</name></author></analytic><series><title level="j">Plant cell reports</title><idno type="eISSN">1432-203X</idno><imprint><date when="2012" 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(génétique)</term><term>Famille multigénique (MeSH)</term><term>Génome végétal (MeSH)</term><term>Introns (MeSH)</term><term>Motifs d'acides aminés (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Populus (génétique)</term><term>Protéines végétales (génétique)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Séquence conservée (MeSH)</term><term>Séquence d'acides aminés (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Facteurs de transcription</term><term>Populus</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Motifs</term><term>Amino Acid Sequence</term><term>Chromosome Mapping</term><term>Conserved Sequence</term><term>Evolution, Molecular</term><term>Exons</term><term>Gene Duplication</term><term>Gene Expression Regulation, Plant</term><term>Genome, Plant</term><term>Introns</term><term>Molecular Sequence Data</term><term>Multigene Family</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Données de séquences moléculaires</term><term>Duplication de gène</term><term>Exons</term><term>Famille multigénique</term><term>Génome végétal</term><term>Introns</term><term>Motifs d'acides aminés</term><term>Phylogenèse</term><term>Régulation de l'expression des gènes végétaux</term><term>Séquence conservée</term><term>Séquence d'acides aminés</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>UNLABELLED</b></p><p>WRKY transcription factors participate in diverse physiological and developmental processes in plants. They have highly conserved WRKYGQK amino acid sequences in their N-termini, followed by the novel zinc-finger-like motifs, Cys₂His₂ or Cys₂HisCys. To date, numerous WRKY genes have been identified and characterized in a number of herbaceous species. Survey and characterization of WRKY genes in a ligneous species would facilitate a better understanding of the evolutionary processes and functions of this gene family. In this study, 104 poplar WRKY genes (PtWRKY) were identified in the latest poplar genome sequence. According to their structural features, the predicted members were divided into the previously defined groups I-III, as described in rice. In addition, chromosomal localization of the genes demonstrated that there might be WRKY gene hot spots in 2.3 Mb regions on chromosome 14. Furthermore, approximately 83% (86 out of 104) WRKY genes participated in gene duplication events, including 69% (29 out of 42) gene pairs which exhibited segmental duplication. Using semi-quantitative RT-PCR, the expression patterns of subgroup III genes were investigated under different stresses [cold, drought, salinity and salicylic acid (SA)]. The data revealed that these genes presented different expression levels in response to various stress conditions. Expression analysis exhibited PtWRKY76 gene induced markedly in 0.1 mM SA or 25% PEG-6000 treatment. The results presented here provide a fundamental clue for cloning specific function genes in further studies and applications.</p></div><div type="abstract" xml:lang="en"><p><b>KEY MESSAGE</b></p><p>This study identified 104 poplar WRKY genes and demonstrated WRKY gene hot spots on chromosome 14. Furthermore, semi-quantitative RT-PCR showed variable stress responses in subgroup III.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22371255</PMID><DateCompleted><Year>2012</Year><Month>11</Month><Day>08</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-203X</ISSN><JournalIssue CitedMedium="Internet"><Volume>31</Volume><Issue>7</Issue><PubDate><Year>2012</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Plant cell reports</Title><ISOAbbreviation>Plant Cell Rep</ISOAbbreviation></Journal><ArticleTitle>Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa.</ArticleTitle><Pagination><MedlinePgn>1199-217</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00299-012-1241-0</ELocationID><Abstract><AbstractText Label="UNLABELLED">WRKY transcription factors participate in diverse physiological and developmental processes in plants. They have highly conserved WRKYGQK amino acid sequences in their N-termini, followed by the novel zinc-finger-like motifs, Cys₂His₂ or Cys₂HisCys. To date, numerous WRKY genes have been identified and characterized in a number of herbaceous species. Survey and characterization of WRKY genes in a ligneous species would facilitate a better understanding of the evolutionary processes and functions of this gene family. In this study, 104 poplar WRKY genes (PtWRKY) were identified in the latest poplar genome sequence. According to their structural features, the predicted members were divided into the previously defined groups I-III, as described in rice. In addition, chromosomal localization of the genes demonstrated that there might be WRKY gene hot spots in 2.3 Mb regions on chromosome 14. Furthermore, approximately 83% (86 out of 104) WRKY genes participated in gene duplication events, including 69% (29 out of 42) gene pairs which exhibited segmental duplication. Using semi-quantitative RT-PCR, the expression patterns of subgroup III genes were investigated under different stresses [cold, drought, salinity and salicylic acid (SA)]. The data revealed that these genes presented different expression levels in response to various stress conditions. Expression analysis exhibited PtWRKY76 gene induced markedly in 0.1 mM SA or 25% PEG-6000 treatment. The results presented here provide a fundamental clue for cloning specific function genes in further studies and applications.</AbstractText><AbstractText Label="KEY MESSAGE" NlmCategory="CONCLUSIONS">This study identified 104 poplar WRKY genes and demonstrated WRKY gene hot spots on chromosome 14. Furthermore, semi-quantitative RT-PCR showed variable stress responses in subgroup III.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>He</LastName><ForeName>Hongsheng</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Lab of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei 230036, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dong</LastName><ForeName>Qing</ForeName><Initials>Q</Initials></Author><Author ValidYN="Y"><LastName>Shao</LastName><ForeName>Yuanhua</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Haiyang</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Suwen</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Cheng</LastName><ForeName>Beijiu</ForeName><Initials>B</Initials></Author><Author 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Motifs</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017124" MajorTopicYN="N">Conserved Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005091" MajorTopicYN="N">Exons</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020440" MajorTopicYN="N">Gene Duplication</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007438" 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Yuanhua" uniqKey="Shao Y" first="Yuanhua" last="Shao">Yuanhua Shao</name><name sortKey="Xiang, Yan" sort="Xiang, Yan" uniqKey="Xiang Y" first="Yan" last="Xiang">Yan Xiang</name><name sortKey="Zhu, Suwen" sort="Zhu, Suwen" uniqKey="Zhu S" first="Suwen" last="Zhu">Suwen Zhu</name></noCountry><country name="République populaire de Chine"><region name="Anhui"><name sortKey="He, Hongsheng" sort="He, Hongsheng" uniqKey="He H" first="Hongsheng" last="He">Hongsheng He</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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